do_master_regulator_hierarchy_inference: Step 4 - Master regulator hierarchy inference

In mbanf/MERIT: MastEr Regulator Inference Tool

Description

This function identifies the master regulator hierarchy

Usage

do_master_regulator_hierarchy_inference(m.grn,
  m.pvalue_differentialExpression = m.pvalue_differentialExpression,
  l.grn_subnetworks, df.transcriptionFactorAnnotation, df.geneGroups,
  tb.geneGroups, v.geneGroups, l.geneGroups, th.min_number_targets = 2,
  th.min_number_MR_targets = 2, th.pval = 0.05,
  foldername.results = "results/")

Arguments

m.grn	= m.grn,
l.grn_subnetworks	= l.grn_subnetworks,
th.min_number_targets	= 2,
th.min_number_MR_targets	= 2,
th.pval	= 0.05

Value

condition specific master regulators and regulator hierarchies (across all genes and across gene groups)

mbanf/MERIT documentation built on June 16, 2021, 1:07 p.m.