transcriptionFactorBindingInference: Step 2 - Transcription factor direct target promoter binding...

In mbanf/MERIT: MastEr Regulator Inference Tool

Description

Step 2 - Transcription factor direct target promoter binding based filtering of gene regulatory link predictions

Usage

transcriptionFactorBindingInference(m.grn, file.TF_to_Motif_IDs = "",
  file.TFBS_motifs = "", file.promoterSeq = "", file.geneSeq = "",
  th.pre_tss = 1000, th.post_tss = 200,
  genome_nucleotide_distribution = c(A = 0.3253439, C = 0.1746561, G =
  0.1746561, T = 0.3253439), th.pval.known_motifs = 0.05,
  th.multipleHypothesisTest = "bonferroni", b.load = FALSE)

Arguments

m.grn

gene regulatory network

Value

DNA binding based grn, DNA binding filtered lead-support grn

Examples

install_and_load_libraries()

mbanf/MERIT documentation built on June 16, 2021, 1:07 p.m.