Description Usage Arguments Details Examples
View source: R/exported_functions.R
Principal component analysis in order to identify individuals that deviate from the population.
1 |
dosage_matrix |
An integer matrix with markers in rows and individuals in columns. |
highlight |
A list of character vectors specifying individual names that should be highlighted |
colors |
Highlight colors. Vector of the same length as |
log |
Character string specifying the log filename to which standard output should be written. If NULL log is send to stdout. |
Missing values are imputed by taking the mean of marker dosages per marker.
1 2 | data("ALL_dosages")
PCA_progeny(dosage_matrix=ALL_dosages, highlight=list(c("P1", "P2")), colors="red")
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