Simulating the expected output from a GWAS with a given causal model

compute_gamma0 | Compute the value of gamma_0 from gamma1,...,gamma_m (must... |

compute_gamma0_PW | Compute the value of gamma_0 from gamma1,...,gamma_m (when we... |

est_statistic | estimate Z score at a single SNP |

est_zscore | estimate Z score at a single SNP |

expected_z_score | Compute expected Z Score |

make_dataset | Simulate a dataset given a set of controls (without... |

make_dataset_pheno | Simulate a dataset given a set of controls (with phenotype)... |

make_GenoProbList | compute a list, GenoProbList, giving the GenoProb values for... |

simulated_z_score | Compute a simulated Z Score |

which_genotypes | computes a matrix telling us which haplotype pairs correspond... |

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