compute_gamma0: Compute gamma0, given haplotype frequencies
In mdfortune/simGWAS: Simulating the expected output from a GWAS with a given causal model
Description
Usage
Arguments
Details
Value
Author(s)
Description
Compute the value of gamma_0 from gamma1,...,gamma_m
Usage
1
compute_gamma0(N0, N1, W, gamma.CV, freq)
Arguments
N0
number of samples with Y=0
N1
number of samples with Y=1
W
The causal SNPs
gamma.CV
The log odds ratios of effect for each CV
freq
Frequencies of SNP appearances (computed using snphap)
Details
Note: assume we must compute the distibution of W in the controls
Value
The value of gamma0
Author(s)
Mary Fortune
mdfortune/simGWAS documentation built on May 22, 2019, 3:25 p.m.
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Description Usage Arguments Details Value Author(s)
Description
Compute the value of gamma_0 from gamma1,...,gamma_m
Usage
1 | compute_gamma0(N0, N1, W, gamma.CV, freq)
|
Arguments
N0 |
number of samples with Y=0 |
N1 |
number of samples with Y=1 |
W |
The causal SNPs |
gamma.CV |
The log odds ratios of effect for each CV |
freq |
Frequencies of SNP appearances (computed using snphap) |
Details
Note: assume we must compute the distibution of W in the controls
Value
The value of gamma0
Author(s)
Mary Fortune
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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