## Package creation according to CRAN ==============================================
#
# http://cran.r-project.org/web/packages/policies.html
#
# see also: https://support.rstudio.com/hc/en-us/articles/200486518-Customizing-Package-Build-Options
if(.Platform$OS.type == "windows") {
if(Sys.getenv("R_ARCH") == "/x64"){
binR <- paste0("\"", Sys.getenv("R_HOME"), "/bin/x64/R.exe\"")
} else{
binR <- paste0("\"", Sys.getenv("R_HOME"), "/bin/R.exe\"")
}
} else {
binR <- "R"
}
version <- read.dcf("./DESCRIPTION")[, "Version"]
# build .tar.gz (with vignettes etc.) and check it afterwards
# the resulting postgwas.tar.gz can be sent to CRAN
setwd(paste0(getwd(), "/..")) # do not pollute our source directory
shell(paste0(binR, " CMD build postgwas")) #takes very long time!
shell(paste0(binR, " CMD build postgwas --no-build-vignettes"))
# OPTIONAL: install and create *.zip windows binary package
shell(paste0(binR, " CMD INSTALL --build postgwas_", version, ".tar.gz"))
# run CRAN checks
shell(paste0(binR, " CMD check --as-cran postgwas_", version, ".tar.gz"))
setwd(paste0(getwd(), "/postgwas"))
# check reverse dependencies to inform maintainers of packages with reverse dependencies
source("http://developer.r-project.org/CRAN/Scripts/depends.R")
reverse_dependencies_with_maintainers("postgwas")
# release package to CRAN with the help of devtools function
devtools::release()
# check results of CRAN processing 48h later under:
# http://cran.r-project.org/web/checks/check_results_postgwas.html
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