Man pages for merrillrudd/LIME
Length-based Integrated Mixed Effects (LIME) assessment method
| age_length | Uncertainty in age given length |
| AgeToLengthComp | Age-converted-to-length structure for compositional data |
| calc_derived_quants | Calculate biological reference points |
| calc_equil_abund | Calculate abundance at equilibrium |
| calc_msy | Calculate MSY reference point |
| calc_ref | Per recruit calculation and spawning potential ratio |
| create_inputs | Create input parameters for TMB model |
| create_lh_list | Create new life history list |
| format_input | TMB input formatting |
| generate_data | Generate data for simulation testing |
| get_converged | Check convergence and re-run for common issues |
| getFt | use newtons method to find instantaneous f 'getft'... |
| LFreq_df | transforms length composition data from matrix, array, or... |
| LIME-package | Length-based Integrated Mixed Effects (LIME) assessment... |
| model_paths | Set up model paths |
| mytheme | Theme for ggplot2 |
| plot_LCfits | plot length composition data and model fits |
| plot_output | plot LIME output |
| print_letter | Print letter on a figure |
| read_sdreport | read TMB Sdreport |
| run_LIME | run LIME model - simulation mode |
| run_stacking | Run stacking algorithm |
| sim_pop | Operating model |
