plot_LCfits: plot length composition data and model fits

In merrillrudd/LIME: Length-based Integrated Mixed Effects (LIME) assessment method

Description

plot_LCfits plot length composition data with option for model fits from LIME and LB-SPR

Usage

plot_LCfits(
  LF_df = NULL,
  binwidth = 1,
  Inputs = NULL,
  Report = NULL,
  LBSPR = NULL,
  plot_fit = TRUE,
  n = FALSE,
  time_labels = NULL,
  plot_type = "density"
)

Arguments

LF_df	list of length frequency matrices
binwidth	bin width for plotting data with LF_df
Inputs	LIME input file; default NULL if only plotting length data
Report	LIME report file; default NULL if only plotting length data
LBSPR	LBSPR results - must have pLF = probability of being harvested in a length bin; default NULL
plot_fit	default = TRUE if Report file or LBSPR file is included, plot the model fits, otherwise plot data only
n	if TRUE, will display sample size of length comp data; default FALSE
time_labels	default=NULL, otherwise a vector of time series names
plot_type	default = "density", alternate = "counts"

Value

figure with length composition data and model fits if Report or LBSPR are specified

Author(s)

M.B. Rudd

merrillrudd/LIME documentation built on June 20, 2020, 2:58 p.m.