age_length | Uncertainty in age given length |
AgeToLengthComp | Age-converted-to-length structure for compositional data |
calc_derived_quants | Calculate biological reference points |
calc_equil_abund | Calculate abundance at equilibrium |
calc_msy | Calculate MSY reference point |
calc_ref | Per recruit calculation and spawning potential ratio |
create_inputs | Create input parameters for TMB model |
create_lh_list | Create new life history list |
format_input | TMB input formatting |
generate_data | Generate data for simulation testing |
get_converged | Check convergence and re-run for common issues |
getFt | use newtons method to find instantaneous f 'getft'... |
LFreq_df | transforms length composition data from matrix, array, or... |
LIME-package | Length-based Integrated Mixed Effects (LIME) assessment... |
model_paths | Set up model paths |
mytheme | Theme for ggplot2 |
plot_LCfits | plot length composition data and model fits |
plot_output | plot LIME output |
print_letter | Print letter on a figure |
read_sdreport | read TMB Sdreport |
run_LIME | run LIME model - simulation mode |
run_stacking | Run stacking algorithm |
sim_pop | Operating model |
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