Files in mervesa/HiCDCPlus
Hi-C Direct Caller Plus
.gitignore
DESCRIPTION
NAMESPACE
R/HTClist2gi_list.R
R/HiCDCPlus.R
R/HiCDCPlus_chr.R
R/HiCDCPlus_parallel.R
R/RcppExports.R
R/add_1D_features.R
R/add_2D_features.R
R/add_hic_counts.R
R/add_hicpro_allvalidpairs_counts.R
R/add_hicpro_matrix_counts.R
R/construct_features.R
R/construct_features_chr.R
R/construct_features_parallel.R
R/expand_1D_features.R
R/extract_hic_eigenvectors.R
R/generate_binned_gi_list.R
R/generate_bintolen_gi_list.R
R/generate_df_gi_list.R
R/get_chr_sizes.R
R/get_chrs.R
R/get_enzyme_cutsites.R
R/gi_list2HTClist.R
R/gi_list_Dthreshold_detect.R
R/gi_list_binsize_detect.R
R/gi_list_read.R
R/gi_list_topdom.R
R/gi_list_validate.R
R/gi_list_write.R
R/hic2icenorm_gi_list.R
R/hicdc2hic.R
R/hicdcdiff.R
R/straw_dump.R
R/utils.R
README.md
inst/CITATION
inst/NEWS
inst/extdata/GSE131651_NSD2_HIGH_arima_example.hic
inst/extdata/GSE131651_NSD2_LOW_arima_example.hic
inst/extdata/GSE131651_NTKOCTCF_new_example.hic
inst/extdata/GSE131651_TKOCTCF_new_example.hic
inst/extdata/GSE131651_analysis_indices.txt.gz
inst/extdata/GSE63525_HMEC_combined_example.hic
inst/extdata/eigenvector_example.hic
inst/extdata/test_bintolen.txt.gz
inst/script/extdata_info.txt
inst/unitTests/test_functions.R
man/HTClist2gi_list.Rd
man/HiCDCPlus.Rd
man/HiCDCPlus_chr.Rd
man/HiCDCPlus_parallel.Rd
man/add_1D_features.Rd
man/add_2D_features.Rd
man/add_hic_counts.Rd
man/add_hicpro_allvalidpairs_counts.Rd
man/add_hicpro_matrix_counts.Rd
man/construct_features.Rd
man/construct_features_chr.Rd
man/construct_features_parallel.Rd
man/expand_1D_features.Rd
man/extract_hic_eigenvectors.Rd
man/figures/manual.pdf
man/generate_binned_gi_list.Rd
man/generate_bintolen_gi_list.Rd
man/generate_df_gi_list.Rd
man/get_chr_sizes.Rd
man/get_chrs.Rd
man/get_enzyme_cutsites.Rd
man/gi_list2HTClist.Rd
man/gi_list_Dthreshold.detect.Rd
man/gi_list_binsize_detect.Rd
man/gi_list_read.Rd
man/gi_list_topdom.Rd
man/gi_list_validate.Rd
man/gi_list_write.Rd
man/hic2icenorm_gi_list.Rd
man/hicdc2hic.Rd
man/hicdcdiff.Rd
man/straw.Rd
man/straw_dump.Rd
src/Makevars
src/Makevars.win
src/RcppExports.cpp
src/straw.cpp
tests/runTests.R
vignettes/HiCDCPlus.Rmd
