API for metaOmic/preproc
Preprocessing of Normalized Gene Expression Data
| Global functions | |
|---|---|
| Annotate | Man page |
| Annotate,Study-method | Man page |
| Annotate,matrix-method | Man page |
| CheckAndInstall | Source code |
| DTYPE.RNAseq.FPKM | Man page |
| DTYPE.RNAseq.count | Man page |
| DTYPE.all | Man page |
| DTYPE.continuous | Man page |
| DTYPE.discrete | Man page |
| DTYPE.microarray | Man page |
| Filter | Man page Source code |
| Filter.Study | Source code |
| Filter.list | Source code |
| GetBiomaps | Source code |
| ID.TYPE.EntrezID | Man page |
| ID.TYPE.RefSeqID | Man page |
| ID.TYPE.all | Man page |
| ID.TYPE.geneSymbol | Man page |
| ID.TYPE.probeID | Man page |
| IMPUTE.method.all | Man page |
| IMPUTE.method.knn | Man page |
| IMPUTE.method.remove | Man page |
| Impute | Man page |
| Impute,Study-method | Man page |
| Impute,matrix-method | Man page |
| Merge | Man page Source code |
| Merge.Study | Source code |
| Merge.matrix | Source code |
| NTYPE.all | Man page |
| NTYPE.continuous | Man page |
| NTYPE.discrete | Man page |
| Naive | Source code |
| PLATFORM.GenePLATFORM.Mouse.Genome.430.2.0 | Man page |
| PLATFORM.HumanHT.12.V3.Bead.Array | Man page |
| PLATFORM.HumanHT.12.V4.Bead.Array | Man page |
| PLATFORM.HumanWG.6.V2.Bead.Array | Man page |
| PLATFORM.HumanWG.V2.Bead.Array | Man page |
| PLATFORM.MouseWG.6.v1.0.Bead.Array | Man page |
| PLATFORM.MouseWG.6.v2.0.Bead.Array | Man page |
| PLATFORM.Rat.v1.0.Bead.Array | Man page |
| PLATFORM.all | Man page |
| PLATFORM.hgu133a | Man page |
| PLATFORM.hgu133b | Man page |
| PLATFORM.hgu133plus2 | Man page |
| PLATFORM.hgu95a | Man page |
| PLATFORM.hgu95av2 | Man page |
| PLATFORM.hgu95b | Man page |
| PLATFORM.hgu95c | Man page |
| PLATFORM.hgu95d | Man page |
| PLATFORM.hgu95e | Man page |
| PLATFORM.hgug4100a | Man page |
| PLATFORM.hgug4101a | Man page |
| PLATFORM.hgug4110b | Man page |
| PLATFORM.hgug4111a | Man page |
| PLATFORM.hgug4112a | Man page |
| PLATFORM.mgu74a | Man page |
| PLATFORM.mgu74av2 | Man page |
| PLATFORM.mgu74b | Man page |
| PLATFORM.mgu74bv2 | Man page |
| PLATFORM.mgu74c | Man page |
| PLATFORM.mgu74cv2 | Man page |
| PLATFORM.mgug4104a | Man page |
| PLATFORM.mgug4120a | Man page |
| PLATFORM.mgug4121a | Man page |
| PLATFORM.mgug4122a | Man page |
| PLATFORM.moe430a | Man page |
| PLATFORM.moe430b | Man page |
| PLATFORM.rat2302 | Man page |
| PLATFORM.rgu34a | Man page |
| PLATFORM.rgu34b | Man page |
| PLATFORM.rgu34c | Man page |
| PLATFORM.rgug4105a | Man page |
| PLATFORM.rgug4130a | Man page |
| PLATFORM.rgug4131a | Man page |
| PoolReplicate | Man page |
| PoolReplicate,Study-method | Man page |
| PoolReplicate,matrix-method | Man page |
| REPLICATE.IQR | Man page |
| REPLICATE.all | Man page |
| REPLICATE.average | Man page |
| REPLICATE.largest | Man page |
| ReadClinical | Man page Source code |
| ReadExpr | Man page Source code |
| SPECIES.all | Man page |
| SPECIES.entrez.all | Man page |
| SPECIES.entrez.human | Man page |
| SPECIES.entrez.mouse | Man page |
| SPECIES.entrez.rat | Man page |
| SPECIES.human | Man page |
| SPECIES.mouse | Man page |
| SPECIES.rat | Man page |
| SPECIES.refseq.all | Man page |
| SPECIES.refseq.human | Man page |
| SPECIES.refseq.mouse | Man page |
| SPECIES.refseq.rat | Man page |
| STYPE.all | Man page |
| STYPE.multiple | Man page |
| STYPE.single | Man page |
| Study-class | Man page |
| TO.MATRIX.clinicals | Man page |
| TO.MATRIX.datasets | Man page |
| TransformDataNames | Source code |
| is.continuous | Man page Source code |
| is.discrete | Man page Source code |
| meta | Man page |
| meta,Study-method | Man page |
| ntype | Man page |
| ntype,Study-method | Man page |
| ntype,character-method | Man page |
| print.Study | Man page Source code |
| setClinical | Man page Source code |
| show,Study-method | Man page |
| study.eg | Man page |
| stype | Man page |
| stype,Study-method | Man page |
| stype,list-method | Man page |
| to.matrix | Man page Source code |
| validateStudy | Source code |
