Man pages for metaOmic/preproc
Preprocessing of Normalized Gene Expression Data

AnnotateGene annotation
Annotate-matrix-methodTitle Annotate Gene Expression Matrix
Annotate-Study-methodTitle Annotate Study
datasets.egAn toy datasets, a list of gene expression matrix
DTYPE.allConstant Option
DTYPE.continuousConstant Option
DTYPE.discreteConstant Option
DTYPE.microarrayConstant Option
DTYPE.RNAseq.countConstant Option
DTYPE.RNAseq.FPKMConstant Option
FilterFilter genes
ID.TYPE.allConstant Option
ID.TYPE.EntrezIDConstant Option
ID.TYPE.geneSymbolConstant Option
ID.TYPE.probeIDConstant Option
ID.TYPE.RefSeqIDConstant Option
ImputeImpute missing values
Impute-matrix-methodTitle Impute Gene Expression Matrix
IMPUTE.method.allConstant Option
IMPUTE.method.knnConstant Option
IMPUTE.method.removeConstant Option
Impute-Study-methodTitle Impute Study
is.continuousTitle is.discrete
is.discreteTitle is.discrete
MergeMerge microarray data sets
metaTitle Generic Function: meta
meta-methodsmeta method
ntypeTitle Generic Function: ntype
NTYPE.allConstant Option
NTYPE.continuousConstant Option
NTYPE.discreteConstant Option
ntype-methodsntype method
PLATFORM.allConstant Option
PLATFORM.GenePLATFORM.Mouse.Genome.430.2.0Constant Option
PLATFORM.hgu133aConstant Option
PLATFORM.hgu133bConstant Option
PLATFORM.hgu133plus2Constant Option
PLATFORM.hgu95aConstant Option
PLATFORM.hgu95av2Constant Option
PLATFORM.hgu95bConstant Option
PLATFORM.hgu95cConstant Option
PLATFORM.hgu95dConstant Option
PLATFORM.hgu95eConstant Option
PLATFORM.hgug4100aConstant Option
PLATFORM.hgug4101aConstant Option
PLATFORM.hgug4110bConstant Option
PLATFORM.hgug4111aConstant Option
PLATFORM.hgug4112aConstant Option
PLATFORM.HumanHT.12.V3.Bead.ArrayConstant Option
PLATFORM.HumanHT.12.V4.Bead.ArrayConstant Option
PLATFORM.HumanWG.6.V1.Bead.ArrayConstant Option
PLATFORM.HumanWG.6.V2.Bead.ArrayConstant Option
PLATFORM.HumanWG.V2.Bead.ArrayConstant Option
PLATFORM.mgu74aConstant Option
PLATFORM.mgu74av2Constant Option
PLATFORM.mgu74bConstant Option
PLATFORM.mgu74bv2Constant Option
PLATFORM.mgu74cConstant Option
PLATFORM.mgu74cv2Constant Option
PLATFORM.mgug4104aConstant Option
PLATFORM.mgug4120aConstant Option
PLATFORM.mgug4121aConstant Option
PLATFORM.mgug4122aConstant Option
PLATFORM.moe430aConstant Option
PLATFORM.moe430bConstant Option
PLATFORM.MouseWG.6.v1.0.Bead.ArrayConstant Option
PLATFORM.MouseWG.6.v2.0.Bead.ArrayConstant Option
PLATFORM.rat2302Constant Option
PLATFORM.Rat.v1.0.Bead.ArrayConstant Option
PLATFORM.rgu34aConstant Option
PLATFORM.rgu34bConstant Option
PLATFORM.rgu34cConstant Option
PLATFORM.rgug4105aConstant Option
PLATFORM.rgug4130aConstant Option
PLATFORM.rgug4131aConstant Option
PoolReplicatePool the replicated gene symbols
PoolReplicate-matrix-methodTitle Handle Duplicated Gene Symbol
PoolReplicate-Study-methodTitle Handle Duplicated Gene Symbol
print.StudyTitle Custom print Function
ReadClinicalTitle Read Clinical File
ReadExprImport and reformat gene expression data set
REPLICATE.allConstant Option
REPLICATE.averageConstant Option
REPLICATE.IQRConstant Option
REPLICATE.largestConstant Option
setClinicalTitle Set Clinical Data
show-Study-methodTitle Custom show Function
SPECIES.allConstant Option
SPECIES.entrez.allConstant Option
SPECIES.entrez.humanConstant Option
SPECIES.entrez.mouseConstant Option
SPECIES.entrez.ratConstant Option
SPECIES.humanConstant Option
SPECIES.mouseConstant Option
SPECIES.ratConstant Option
SPECIES.refseq.allConstant Option
SPECIES.refseq.humanConstant Option
SPECIES.refseq.mouseConstant Option
SPECIES.refseq.ratConstant Option
Study-classTitle Study Class
study.egAn Study object with clinical data
stypeTitle Generic Function: stype
STYPE.allConstant Option
stype-methodsstype method
STYPE.multipleConstant Option
STYPE.singleConstant Option
to.matrixTitle Study to matrix
TO.MATRIX.clinicalsConstant Option
TO.MATRIX.datasetsConstant Option
metaOmic/preproc documentation built on April 10, 2018, 1:25 a.m.