Annotate | Gene annotation |
Annotate-matrix-method | Title Annotate Gene Expression Matrix |
Annotate-Study-method | Title Annotate Study |
DTYPE.all | Constant Option |
DTYPE.continuous | Constant Option |
DTYPE.discrete | Constant Option |
DTYPE.microarray | Constant Option |
DTYPE.RNAseq.count | Constant Option |
DTYPE.RNAseq.FPKM | Constant Option |
Filter | Filter genes |
ID.TYPE.all | Constant Option |
ID.TYPE.EntrezID | Constant Option |
ID.TYPE.geneSymbol | Constant Option |
ID.TYPE.probeID | Constant Option |
ID.TYPE.RefSeqID | Constant Option |
Impute | Impute missing values |
Impute-matrix-method | Title Impute Gene Expression Matrix |
IMPUTE.method.all | Constant Option |
IMPUTE.method.knn | Constant Option |
IMPUTE.method.remove | Constant Option |
Impute-Study-method | Title Impute Study |
is.continuous | Title is.discrete |
is.discrete | Title is.discrete |
Merge | Merge microarray data sets |
meta | Title Generic Function: meta |
meta-methods | meta method |
ntype | Title Generic Function: ntype |
NTYPE.all | Constant Option |
NTYPE.continuous | Constant Option |
NTYPE.discrete | Constant Option |
ntype-methods | ntype method |
PLATFORM.all | Constant Option |
PLATFORM.GenePLATFORM.Mouse.Genome.430.2.0 | Constant Option |
PLATFORM.hgu133a | Constant Option |
PLATFORM.hgu133b | Constant Option |
PLATFORM.hgu133plus2 | Constant Option |
PLATFORM.hgu95a | Constant Option |
PLATFORM.hgu95av2 | Constant Option |
PLATFORM.hgu95b | Constant Option |
PLATFORM.hgu95c | Constant Option |
PLATFORM.hgu95d | Constant Option |
PLATFORM.hgu95e | Constant Option |
PLATFORM.hgug4100a | Constant Option |
PLATFORM.hgug4101a | Constant Option |
PLATFORM.hgug4110b | Constant Option |
PLATFORM.hgug4111a | Constant Option |
PLATFORM.hgug4112a | Constant Option |
PLATFORM.HumanHT.12.V3.Bead.Array | Constant Option |
PLATFORM.HumanHT.12.V4.Bead.Array | Constant Option |
PLATFORM.HumanWG.6.V2.Bead.Array | Constant Option |
PLATFORM.HumanWG.V2.Bead.Array | Constant Option |
PLATFORM.mgu74a | Constant Option |
PLATFORM.mgu74av2 | Constant Option |
PLATFORM.mgu74b | Constant Option |
PLATFORM.mgu74bv2 | Constant Option |
PLATFORM.mgu74c | Constant Option |
PLATFORM.mgu74cv2 | Constant Option |
PLATFORM.mgug4104a | Constant Option |
PLATFORM.mgug4120a | Constant Option |
PLATFORM.mgug4121a | Constant Option |
PLATFORM.mgug4122a | Constant Option |
PLATFORM.moe430a | Constant Option |
PLATFORM.moe430b | Constant Option |
PLATFORM.MouseWG.6.v1.0.Bead.Array | Constant Option |
PLATFORM.MouseWG.6.v2.0.Bead.Array | Constant Option |
PLATFORM.rat2302 | Constant Option |
PLATFORM.Rat.v1.0.Bead.Array | Constant Option |
PLATFORM.rgu34a | Constant Option |
PLATFORM.rgu34b | Constant Option |
PLATFORM.rgu34c | Constant Option |
PLATFORM.rgug4105a | Constant Option |
PLATFORM.rgug4130a | Constant Option |
PLATFORM.rgug4131a | Constant Option |
PoolReplicate | Pool the replicated gene symbols |
PoolReplicate-matrix-method | Title Handle Duplicated Gene Symbol |
PoolReplicate-Study-method | Title Handle Duplicated Gene Symbol |
print.Study | Title Custom print Function |
ReadClinical | Title Read Clinical File |
ReadExpr | Import and reformat gene expression data set |
REPLICATE.all | Constant Option |
REPLICATE.average | Constant Option |
REPLICATE.IQR | Constant Option |
REPLICATE.largest | Constant Option |
setClinical | Title Set Clinical Data |
show-Study-method | Title Custom show Function |
SPECIES.all | Constant Option |
SPECIES.entrez.all | Constant Option |
SPECIES.entrez.human | Constant Option |
SPECIES.entrez.mouse | Constant Option |
SPECIES.entrez.rat | Constant Option |
SPECIES.human | Constant Option |
SPECIES.mouse | Constant Option |
SPECIES.rat | Constant Option |
SPECIES.refseq.all | Constant Option |
SPECIES.refseq.human | Constant Option |
SPECIES.refseq.mouse | Constant Option |
SPECIES.refseq.rat | Constant Option |
Study-class | Title Study Class |
study.eg | An Study object with clinical data |
stype | Title Generic Function: stype |
STYPE.all | Constant Option |
stype-methods | stype method |
STYPE.multiple | Constant Option |
STYPE.single | Constant Option |
to.matrix | Title Study to matrix |
TO.MATRIX.clinicals | Constant Option |
TO.MATRIX.datasets | Constant Option |
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