Annotate-matrix-method: Title Annotate Gene Expression Matrix

Description Usage Arguments Value Author(s)

Description

Title Annotate Gene Expression Matrix

Usage

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## S4 method for signature 'matrix'
Annotate(dataset, id.type = ID.TYPE.geneSymbol,
  platform = "", species = "", annotation.file = NA)

Arguments

dataset

matrix. A numeric matrix of gene expressions.

id.type

a character string to specify the type of gene ID. It should be "ProbeID", "GeneSymbol", "RefSeqID", or "EntrezID".

platform

a character string to specify the platform of the gene expression data set. See details.

species

a character string to specify the species of the gene expression data set. The accepted species include "human", "mouse", and "rat".

annotation.file

a character string of a txt file name to upload user-specific annotation file. The default is NA. See details.

Value

An annotated matrix of gene expressions.

Author(s)

Schwannden Kuo


metaOmic/preproc documentation built on April 10, 2018, 1:25 a.m.