Man pages for metabolomicsworkbench/MetENP
Metabolite enrichment analysis and their associated enriched pathways
| anova_ana | Performs anova analysis Performs an anova across all response... |
| comp_linkedto_pathways | counts total no of compounds that are linked to KEGG pathways |
| compoundinfo | Counts total no of compound in a pathway that has been linked... |
| convert_refmet | Associates refmet class to the metabolites |
| dotplot_met_class_path | Plots dot plot pf PATHWAY and Metabolite class |
| enzyme_gene_info | Gets gene and enzyme info |
| getmwstudies | Gets metabolomics data, metadata and metabolite info from... |
| ls_path | compound linked to kegg pathways |
| map_keggid | Assigns kegg id to the significant metabolites |
| mapspspath | Maps species specific pathways This is important because... |
| metclassenrichment | Provides enrichment score of the selected metabolic class via... |
| metcountplot | counts and plots significant metabolite |
| met_pathways | Gives information on pathways linked to significant... |
| path_enrichmentscore | Calculates pathway enrichment score of the pathways linked to... |
| pathinfo | Provides pathway or orthology information from reaction data... |
| plot_heatmap | Plots heatmap |
| plot_met_enrichment | Plots metabolite enrichment score |
| plot_pathway_networks | Plots 1st degree pathway network of only pathways having... |
| plot_volcano | Plots Volcano plot |
| react_substrate | Gets information whether metabolite is a product or substrate |
| rxninfo | Gives details of reactions for the metabolites |
| separate_data | Separates user data into metadata and metabolomics data with... |
| significant_met | Provides log2fold change and p value on metabolomics data... |
| significant_met_own | Provides log2fold change and p value on custom metabolomics... |
