metcountplot: counts and plots significant metabolite

In metabolomicsworkbench/MetENP: Metabolite enrichment analysis and their associated enriched pathways

counts and plots significant metabolite

Description

counts and plots significant metabolite

Usage

metcountplot(
  df_metclass,
  metclass,
  plotting,
  thres_logfC,
  updown_fillcolor = c("red", "green")
)

Arguments

df_metclass	dataframe having significant metabolite with metabolite class as obtained from map_refmet_class.R
metclass	sub_class, main_class or super_class
plotting	logical TRUE or FALSE, default true
thres_logfC	log2 fold change threshold
updown_fillcolor	user-defined fill color for the bars for up/increased and down/decreased metabolites

Examples

count_changes = metcountplot(df_metclass=sig_metabolites_pubchem, metclass='sub_class', plotting=TRUE, thres_logfC = 0.5, updown_fillcolor=c("red", "green"))

metabolomicsworkbench/MetENP documentation built on April 12, 2025, 7:55 p.m.