NEW FEATURES
SIGNIFICANT USER-VISIBLE CHANGES
BUG FIXES
NEW FEATURES
SIGNIFICANT USER-VISIBLE CHANGES
BUG FIXES
NEW FEATURES
A -> B
and B -> C
, but not A -> C
, will output A -> C
and B -> C
. That is,
transitivity is applied and the final output will always use the distal most
transcript in a chain as the final output.SIGNIFICANT USER-VISIBLE CHANGES
export*()
methods now include automatic detection of .gz
filenames,
which toggles the use of compressed (gzip
) exports.BUG FIXES
NEW FEATURES
SIGNIFICANT USER-VISIBLE CHANGES
generateMergeTable()
and exportMergeTable()
for creating a merge
table for transcripts that are not separated by a thresholded distance.
Such files can be used by transcript quantification tools to specify what
transcripts should be merged.BUG FIXES
NEW FEATURES
SIGNIFICANT USER-VISIBLE CHANGES
BUG FIXES
BPPARAM
was not being passed through to internal bplapply
calls.NEW FEATURES
NEWS.md
file to track changes to the package.SIGNIFICANT USER-VISIBLE CHANGES
truncateTxome()
method includes an optional BPPARAM
with which users
can pass a specific BiocParallelParam
. If not provided, it will respect the
result of BiocParallel::bpparam()
, which can be globally set using
BiocParallel::register()
.BUG FIXES
NEW FEATURES
SIGNIFICANT USER-VISIBLE CHANGES
truncateTxome()
method now deduplicates transcripts spanning identical
ranges after truncation.BUG FIXES
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