truncateTxome: Truncate Transcriptome

In mfansler/txcutr: Transcriptome CUTteR

Description

Truncate Transcriptome

Usage

truncateTxome(txdb, maxTxLength = 500, ...)

## S4 method for signature 'TxDb'
truncateTxome(txdb, maxTxLength = 500, BPPARAM = bpparam())

Arguments

txdb	a TxDb object
maxTxLength	the maximum length of transcripts
...	additional arguments
BPPARAM	A BiocParallelParam object specifying whether and how the method should be parallelized.

Value

a TxDb object

a TxDb object

Examples

library(TxDb.Scerevisiae.UCSC.sacCer3.sgdGene)

## load annotation
txdb <- TxDb.Scerevisiae.UCSC.sacCer3.sgdGene

## restrict to 'chrI' transcripts
seqlevels(txdb) <- c("chrI")

## last 500 nts per tx
txdb_w500 <- truncateTxome(txdb)
txdb_w500

## last 100 nts per tx
txdb_w100 <- truncateTxome(txdb, maxTxLength=100)
txdb_w100

mfansler/txcutr documentation built on Dec. 21, 2021, 4:59 p.m.