control-methods: Get control counts

In mg14/deepSNV-old: Detection of subclonal SNVs in deep sequencing data.

Description

Convenience function to obtain the control counts from a deepSNV object.

Usage

control(deepSNV, ...)

## S4 method for signature 'deepSNV'
control(deepSNV, total = FALSE)

Arguments

deepSNV	a deepSNV-class object
total	Logical. If true the sum of both strands is returned
...	Additional param passed to specific methods

Value

A matrix with the absolute frequencies summed over both strands.

Examples

data(HIVmix)
control(HIVmix)[1:10,]
control(HIVmix, total=TRUE)[1:10,]

mg14/deepSNV-old documentation built on May 22, 2019, 8:52 p.m.