estimateRho: Helper function for estimating the dispersion factor rho
In mg14/deepSNV-old: Detection of subclonal SNVs in deep sequencing data.
Description
Usage
Arguments
Value
Note
Author(s)
Description
It uses a method of moments approximation to estimate rho from the variances of the relative frequencies nu across samples
Usage
1
estimateRho(x, mu, ix, pseudo.rho = .Machine$double.eps)
Arguments
x
counts
mu
relative frequency across all samples
ix
index indicating the set of samples to use (typically indicating those with relative frequency smaller than 0.1).
pseudo.rho
a pseudo count added to each sample to avoid problems with zeros. Default = .Machine$double.eps
Value
rho
Note
Experimental code, subject to changes
Author(s)
mg14
mg14/deepSNV-old documentation built on May 22, 2019, 8:52 p.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Description Usage Arguments Value Note Author(s)
Description
It uses a method of moments approximation to estimate rho from the variances of the relative frequencies nu across samples
Usage
1 | estimateRho(x, mu, ix, pseudo.rho = .Machine$double.eps)
|
Arguments
x |
counts |
mu |
relative frequency across all samples |
ix |
index indicating the set of samples to use (typically indicating those with relative frequency smaller than 0.1). |
pseudo.rho |
a pseudo count added to each sample to avoid problems with zeros. Default = .Machine$double.eps |
Value
rho
Note
Experimental code, subject to changes
Author(s)
mg14
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.