counts: Example count table

In mg14/deepSNV-old: Detection of subclonal SNVs in deep sequencing data.

Description

A table with counts of the HIVmix data set. Used for minimal unit testing.

Examples

data("counts", package="deepSNV")
countsFromBam <- bam2R(file = system.file("extdata", "test.bam", package="deepSNV"), chr="B.FR.83.HXB2_LAI_IIIB_BRU_K034", start = 3120, stop=3140, q = 10)
all(counts == countsFromBam)

mg14/deepSNV-old documentation built on May 22, 2019, 8:52 p.m.