trueSNVs: Example .bam data and true SNVs.

In mg14/deepSNV-old: Detection of subclonal SNVs in deep sequencing data.

Description

Two .bam alignments as example data sets are downloaded remotely via http. Sequenced were a 1,512 nt fragment of the HIV genome and a mixture (90% + 10%) with another variants. The two sequences were confirmed by Sanger sequencing and stored in the table trueSNVs.

Examples

data(HIVmix)
data(trueSNVs)
table(p.adjust(p.val(HIVmix), method="BH") < 0.05, trueSNVs)

mg14/deepSNV-old documentation built on May 22, 2019, 8:52 p.m.