BetterVlnPlot: Generate violin plots from a Seurat object and vector of...

In mgildea87/CVRCFunc: Functions for CVRC bioinformatics

Generate violin plots from a Seurat object and vector of genes.

Description

Generate violin plots from a Seurat object and vector of genes.

Usage

BetterVlnPlot(
  seurat,
  clus_ident = "seurat_clusters",
  condition_ident = vector(),
  features,
  assay = "RNA",
  idents_to_plot = vector(),
  ncol = 1,
  dot_size = 1,
  y_axis_title = "log normalized counts"
)

Arguments

seurat	seurat object
clus_ident	Identity for clusters. 'seurat_clusters' by default.
condition_ident	name of metadata column to split plots by
features	vector of gene/feature names to plot
assay	assay to plot from. default = 'RNA'
idents_to_plot	vector of a subset of specific idents within clus_ident to plot
ncol	number of columns if plotting multiple genes
dot_size	size of dots. Set to NA to remove dots
y_axis_title	y-axis label. Default is 'log normalized counts'

mgildea87/CVRCFunc documentation built on Nov. 9, 2024, 7:39 p.m.