validateCompoundList: Validation of compound list

In michaelwitting/masstrixR: Annotation of MS based metabolomics data

Description

Compound list that are used to generate SQLite DBs require a speficic format prior to generation of the actual DB.

Usage

validateCompoundList(compoundList, rt = FALSE, ccs = FALSE)

Arguments

compoundList	List of compounds that shall be added to DB
rt	Boolean value if RT is used
ccs	Boolean value if CCS is used

Details

This function validates if all required columns are in place and of the right format. Specific columns are added, if required (e.g. KEGG Ids)

Value

Boolean value if list is suitable for upload to SQLiteDB

Author(s)

Michael Witting, [e-mail]

See Also

createDb

prepareCompoundList

Examples

validateCompoundList(compoundList)

michaelwitting/masstrixR documentation built on Nov. 8, 2019, 8:12 p.m.