API for michaelwitting/masstrixR
Annotation of MS based metabolomics data

Global functions
.bin_values Man page Source code
.calculateAdductMasses Source code
.create_list_common Source code
.create_list_individual Source code
.fix_breaks Man page Source code
.kegg Man page
alignSpectra Man page Source code
bin_Spectra Man page Source code
bin_Spectrum Man page Source code
calcAdductFormula Man page
calculateExactMass Man page
calculateKendrickMass Man page Source code
calculateKendrickMassDefect Man page Source code
calculateNominalKendrickMass Man page Source code
calculateRefKendrickMassDefect Man page Source code
checkRmkd Man page Source code
cleanSpectra Man page Source code
commonPeaks Man page Source code
containsFormula Man page
containsFragmentDifference Man page Source code
containsNeutralLossIon Man page Source code
containsProductIon Man page Source code
createDb Man page Source code
createMs2Db Man page Source code
createResultsSet Man page Source code
dotproduct Man page Source code
extractMgfSpectrum2Info Source code
filterIsotopePeaks Man page Source code
findCommonFragments Source code
forwardDotProduct Man page Source code
generateChemFormula Man page
getAdductCalc Man page
getAdductNames Man page
getAllNegModeAdducts Man page
getAllPosModeAdducts Man page
getExternalDbIds Man page
getIsotopeAddList Man page
getNeutralLossCalc Man page
ionFormulaSearch Man page Source code
isoPatternSimilarity Man page Source code
makeDiffSpectra Source code
makeMirrorPlot Source code
massShiftForwadDotProduct Man page Source code
matchMassDiff Man page Source code
match_mz_inter Man page Source code
match_mz_intra Man page Source code
mutate_NL_neg Source code
mutate_NL_pos Source code
mutate_rmkd Source code
mzSearch Man page Source code
neutralFormulaSearch Man page Source code
parseChemFormula Man page
plotSpectrum Source code
predictIsoPattern Man page Source code Source code
prepareCompoundList Man page Source code
prepareIsoCompoundList Man page
readAnnotatedMgfData Man page Source code
readGdaFile Man page Source code
readMassBankFile Man page Source code
readMassBankFolder Man page Source code
reconstructIsoPattern Man page Source code Source code
reverseDotProduct Man page Source code
scoreIsoPattern Man page Source code Source code
searchByExactMassOnline Man page
searchByFormulaOnline Man page
searchByPrecursor Man page Source code
searchByPrecursorOnline Man page
standardizeChemFormula Man page
validateCompoundList Man page Source code
xRank Man page Source code
michaelwitting/masstrixR documentation built on Aug. 18, 2019, 1:33 a.m.