design: Accessors for the 'design' slot of a DESeqDataSet object.

In mikelove/DESeq2: Differential gene expression analysis based on the negative binomial distribution

Accessors for the 'design' slot of a DESeqDataSet object.

Description

The design holds the R formula which expresses how the counts depend on the variables in colData. See DESeqDataSet for details.

Usage

## S4 method for signature 'DESeqDataSet'
design(object)

## S4 replacement method for signature 'DESeqDataSet,formula'
design(object) <- value

## S4 replacement method for signature 'DESeqDataSet,matrix'
design(object) <- value

Arguments

object	a DESeqDataSet object
value	a formula used for estimating dispersion and fitting Negative Binomial GLMs

Examples

dds <- makeExampleDESeqDataSet(m=4)
design(dds) <- formula(~ 1)

mikelove/DESeq2 documentation built on Nov. 18, 2024, 1:37 p.m.