construct: construct a slice object from an expression matrix

In minzheguo/SLICE: Determining Cell Differentiation and Lineage based on Single Cell Entropy

construct a slice object from an expression matrix

Description

construct and initialize a slice object from an expression matrix

Usage

construct(exprmatrix, cellidentity = NULL, projname = NULL)

Arguments

exprmatrix	A numeric matrix of expression values; rows are genes, columns are cells; row names are official NCBI gene symbols, column names are cell ids/names
cellidentity	A vector encoding the original identity of cells (e.g., time information or cell types); if not set, the default is a vector of "cell"
projname	A string describing the analysis; if not set, the default value is "SLICE-" with timestamp information

Value

the constructed and initialized slice object

minzheguo/SLICE documentation built on June 5, 2023, 11:56 a.m.