getProfiles | R Documentation |
Call after getTrajectories function to extract the gene expression profiles in each of the reconstructed cell trajectories
getProfiles(object, trajectory.type = "sp", genes.use = NULL, ...)
object |
Slice object |
trajectory.type |
The extract algorithm will be different depending on the type of cell trajectories: sp (shortest-path based) or pc (principal-curve based) |
genes.use |
If set, only the expression profiles of the specified set of genes will be extracted; otherwise, the expression profiles of all genes will be extracted |
updated slice object with extracted expression profiles in the "profiles" slot.
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