API for mireia-bioinfo/pipelineNGS
Methods for Epigenetic Data Processing
| Global functions | |
|---|---|
| .getBDGforSEACR | Man page Source code |
| .getStatsSingle | Source code |
| .obtainReadNumber | Source code |
| .parseBowtie2LogPE | Source code |
| .parseBowtie2LogSE | Source code |
| alignmentBowtie2 | Man page Source code |
| bamToBigWig | Man page Source code |
| callPeak | Man page Source code |
| fastqc | Man page Source code |
| filtOutBAM | Man page Source code |
| getNameFromPath | Man page Source code |
| getStats | Man page Source code |
| mergeBAMs | Man page Source code |
| offsetATAC | Man page Source code |
| offsetATACSE | Man page Source code |
| paramdata | Man page |
| peakCallingSEACR | Man page Source code |
| pipelineNGS | Man page |
| plotAlignment | Man page Source code |
| processCUTTAG | Man page Source code |
| process_epigenome | Man page Source code |
| tableFromIdxstats | Man page Source code |
| trim_galore | Source code |
