tableFromIdxstats: Table form idxstats
In mireia-bioinfo/pipelineNGS: Methods for Epigenetic Data Processing
tableFromIdxstats R Documentation
Table form idxstats
Description
Given a bam file, returns samtools idxstats output as a data.frame.
Usage
tableFromIdxstats(log)
Arguments
bam
Character string with the name and path of a single BAM file. Index should
be in the same folder.
Value
A data.frame with the output of samtools idxstats.
Examples
## Not run:
df <- tableFromIdxstats("path/to/file.bam")
## End(Not run)
mireia-bioinfo/pipelineNGS documentation built on Jan. 2, 2023, 11:18 a.m.
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| tableFromIdxstats | R Documentation |
Table form idxstats
Description
Given a bam file, returns samtools idxstats output as a data.frame.
Usage
tableFromIdxstats(log)
Arguments
bam |
Character string with the name and path of a single BAM file. Index should be in the same folder. |
Value
A data.frame with the output of samtools idxstats.
Examples
## Not run:
df <- tableFromIdxstats("path/to/file.bam")
## End(Not run)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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