paramdata: Data parameters for different experiments
In mireia-bioinfo/pipelineNGS: Methods for Epigenetic Data Processing

paramdata

R Documentation

Data parameters for different experiments

A dataset containing the different parameters used for the pipelines analyzing different types of experiments.

paramdata

A data frame with 4 rows and 6 columns

Parameter: Name of the parameter used as input (seq_type) to the function process_epigenome().
Experiment: Complete name of the experiment
Extra_bowtie2: Extra parameters to be passed to the bowtie2 aligment.
Offset_correction: Whether to perform (TRUE) or not (FALSE) transposase insertion offset correction.
peak_type: Whether to call narrow or broad peaks in MACS2.
shift: Whether to shift the coordinates of the peaks in MACS2.