fastqc: Quality Control with FastQC

In mireia-bioinfo/pipelineNGS: Methods for Epigenetic Data Processing

Quality Control with FastQC

Description

Runs FastQC for quality control analysis of FastQ files.

Usage

fastqc(files, path_fastqc = "fastqc/", cores = 6)

Arguments

files	String or character vector with the path and filename of the FastQ files.
path_fastqc	Character indicating the output directory for the FastQC reports.
cores	Number of threads to use for the analysis.

Value

Creates a folder path_fastqc containing the output reports generated by FastQC. See the FastQC documentation for details.

Examples

## Not run: 
fastqc(files="path/to/fastq/file.fastq.gz",
       path_fastqc="fastqc/", cores=6)

## End(Not run)

mireia-bioinfo/pipelineNGS documentation built on Jan. 2, 2023, 11:18 a.m.