offsetATACSE: Offset correction for SE ATAC-seq data

In mireia-bioinfo/pipelineNGS: Methods for Epigenetic Data Processing

Offset correction for SE ATAC-seq data

Description

It performs offset corrrection on single end ATAC-seq files.

Usage

offsetATACSE(file, chunk = 1e+06, positive = 4L, negative = 5L)

Arguments

file	Path for the BAM file.
chunk	Size of the chunk to load into memory for ATAC-seq read offset. This argument is necessary only when type="SE".
positive	Positive offset: 4.
negative	Negative offset: 5.

mireia-bioinfo/pipelineNGS documentation built on Jan. 2, 2023, 11:18 a.m.