Files in mirjamlaager/mrsamcmc
An Implementation of Data Augmented MCMC for Inference on MRSA Transmission
DESCRIPTION
LICENSE
NAMESPACE
R/RcppExports.R
R/document_dataset.R
R/generate_configuration.R
R/generate_priors.R
R/posterior_predictive_checks.R
R/run_forward_simulations.R
R/run_mcmc.R
R/run_mcmc_with_types.R
R/zzz.R
data/patient_data_simulated.rda
man/col_pop.Rd
man/count_false_negative_tests.Rd
man/count_tests_forward_simulations.Rd
man/count_true_positive_tests.Rd
man/daily_col_prob_precalculated.Rd
man/generate_configuration.Rd
man/generate_priors.Rd
man/log_lik_importation.Rd
man/log_lik_overall.Rd
man/log_lik_overall_with_types.Rd
man/log_lik_rho.Rd
man/log_lik_sources.Rd
man/log_lik_transmission.Rd
man/onward_check.Rd
man/patient_data_simulated.Rd
man/posterior_predictive_checks.Rd
man/run_forward_simulations.Rd
man/run_mcmc.Rd
man/run_mcmc_with_types.Rd
man/update_onward_transmission.Rd
src/.gitignore
src/RcppExports.cpp
src/col_pop.cpp
src/col_pop.h
src/count_false_negative_tests.cpp
src/count_false_negative_tests.h
src/count_tests_forward_simulations.cpp
src/count_true_positive_tests.cpp
src/count_true_positive_tests.h
src/daily_col_prob.cpp
src/daily_col_prob.h
src/daily_col_prob_precalculated.cpp
src/daily_col_prob_precalculated.h
src/get_ap.cpp
src/get_ap.h
src/get_ap_with_types.cpp
src/log_lik_importation.cpp
src/log_lik_importation.h
src/log_lik_overall.cpp
src/log_lik_overall.h
src/log_lik_overall_with_types.cpp
src/log_lik_rho.cpp
src/log_lik_rho.h
src/log_lik_sources.cpp
src/log_lik_sources.h
src/log_lik_transmission.cpp
src/log_lik_transmission_patient_subset.cpp
src/log_lik_transmission_patient_subset.h
src/onward_check.cpp
src/onward_check.h
src/update_onward_transmission.cpp
tests/testthat.R
tests/testthat/test_generate_configuration.R
vignettes/.gitignore
vignettes/bibliography.bib
vignettes/forward_simulations.Rmd
vignettes/infer_sources.Rmd
vignettes/introduction.Rmd
