PeptideAnnotationModule: PeptideAnnotationModule

In mjhelf/Metaboseek: Metaboseek platform

PeptideAnnotationModule

Description

This module allows setting fixed and variable peptide modifications to be applied in peptide-related calculations (fragment annotation and peptide mass calculations)

Usage

PeptideAnnotationModule(input, output, session, values)

PeptideAnnotationModuleUI(id)

Arguments

input	arguments necessary for use with callModule()
output	arguments necessary for use with callModule()
session	arguments necessary for use with callModule()
values	a reactiveValues object that in effect gives read and write access to external objects
id	id to be used to define a namespace via NS() (must match id in callModule for the server Module)

Details

Does not return anything, but

requires

PeptideModificationsModule, SelectMS2Module, MainTableModule

initiates

nothing

reads

values$GlobalOpts$Peptides.variableMods, values$GlobalOpts$Peptides.fixedMods, FTselection()

modifies

values$MSData$MS2.selected

Value

If the server module for this Module returns something, it is described in Details.

Functions

• PeptideAnnotationModule: server logic for PeptideAnnotationModule

• PeptideAnnotationModuleUI: UI elements for PeptideAnnotationModule

See Also

values for a description of the values object

mjhelf/Metaboseek documentation built on April 23, 2022, 12:09 p.m.