PeptideSequencePlotWidget: PeptideSequencePlotWidget

In mjhelf/Metaboseek: Metaboseek platform

PeptideSequencePlotWidget

Description

This module allows setting fixed and variable peptide modifications to be applied in peptide-related calculations (fragment annotation and peptide mass calculations)

Usage

PeptideSequencePlotWidget(
  input,
  output,
  session,
  reactives = reactive({     list() }),
  layout = reactive({     list(active = T, height = 550) })
)

PeptideSequencePlotWidgetUI(id)

Arguments

input	arguments necessary for use with callModule()
output	arguments necessary for use with callModule()
session	arguments necessary for use with callModule()
reactives	list of arguments to be passed to MassTools::plotAnnotatedPeptide inside of shiny::reactive()
layout	list of layout options (active: logical, and height: numeric)
id	id to be used to define a namespace via NS() (must match id in callModule for the server Module)

Details

Plots with MassTools::plotAnnotatedPeptide

Value

nothing; generates a specialized plotOutput

Functions

• PeptideSequencePlotWidget: server logic for PeptideSequencePlotWidget

• PeptideSequencePlotWidgetUI: UI elements for PeptideSequencePlotWidget

mjhelf/Metaboseek documentation built on April 23, 2022, 12:09 p.m.