rawEICm: rawEICm

View source: R/Functions_extract_EICs.R

rawEICmR Documentation

rawEICm

Description

EICs from an xcmsRaw object, modified version of xcms::rawEIC xcmsRaw method. Major difference: Handling of cases where no scan is in rt range. xcms::rawEIC also drops the last scan within range, rawEICm does not.

Usage

rawEICm(
  object,
  mzrange = numeric(),
  rtrange = numeric(),
  scanrange = numeric(),
  viewermode = T
)

Arguments

object

xcmsRaw object

mzrange

a range of m/z values (numeric(2)).

rtrange

a range of rt values (numeric(2)).

scanrange

a range of scan number values (numeric(2)).

viewermode

True to change handling of out of range rt values for the Mseek viewer. DEPRECATED (always used)

Value

a list with elements scan and intensity, representing intensity for an m/z range across scans


mjhelf/Metaboseek documentation built on April 23, 2022, 12:09 p.m.