specplot: specplot

In mjhelf/Metaboseek: Metaboseek platform

specplot

Description

Plot an MS spectrum

Usage

specplot(
  x,
  y,
  norm = max(y)/100,
  cx = 1.5,
  k = 10,
  fileName = "title",
  yrange = c(0, 100),
  xrange = range(x),
  maxi = max(y),
  labels = NULL,
  mar = c(4, 6, 6, 2),
  ylab = "Relative Intensity (%)",
  ylabshift = 0
)

Arguments

x	mz coordinates
y	intensity coordinates
norm	normalize by
cx	font size
k	top k intensity peaks will be labeled
fileName	plot title
yrange	y axis range
xrange	x axis range
maxi	max intensity to be plotted on side
labels	data.frame containing at least x and y coordinates, plus optional columns: label and color
mar	margins passed to par()
ylab	y axis label
ylabshift	shift horizontal position of y axis label

Details

NOTE: This function is deprecated. Use specplot2 instead

Value

plots a spectrum view in the current plotting device

mjhelf/Metaboseek documentation built on April 23, 2022, 12:09 p.m.