FeatureReportModule: FeatureReportModule

View source: R/Module_FeatureReportModule.R

FeatureReportModuleR Documentation

FeatureReportModule

Description

Module for visualization of MS1 and MS2 spectra along with EICs, plus option to plot them together with SIRIUS results in a pdf

Usage

FeatureReportModule(
  input,
  output,
  session,
  values,
  MS2feed = NULL,
  tree = reactive({ }),
  fragments = NULL
)

FeatureReportModuleUI(id)

Arguments

input

arguments necessary for use with callModule()

output

arguments necessary for use with callModule()

session

arguments necessary for use with callModule()

values

a reactiveValues object that in effect gives read and write access to external objects

MS2feed

temporary solution to feed current MS2 scan in from MS2BrowserModule

tree

feed SIRIUS fragmentation tree in from MS2BrowserModule

fragments

feed SIRIUS fragmentation annotation for the MS2 scan

id

id to be used to define a namespace via NS() (must match id in callModule for the server Module)

Value

Returns its internalValues

Functions

  • FeatureReportModule: server logic

  • FeatureReportModuleUI: UI elements

See Also

values for a description of the values object


mjhelf/Mosaic documentation built on April 28, 2022, 11:32 a.m.