FeatureReportModule: FeatureReportModule

In mjhelf/Mosaic: Metaboseek platform

FeatureReportModule

Description

Module for visualization of MS1 and MS2 spectra along with EICs, plus option to plot them together with SIRIUS results in a pdf

Usage

FeatureReportModule(
  input,
  output,
  session,
  values,
  MS2feed = NULL,
  tree = reactive({ }),
  fragments = NULL
)

FeatureReportModuleUI(id)

Arguments

input	arguments necessary for use with callModule()
output	arguments necessary for use with callModule()
session	arguments necessary for use with callModule()
values	a reactiveValues object that in effect gives read and write access to external objects
MS2feed	temporary solution to feed current MS2 scan in from MS2BrowserModule
tree	feed SIRIUS fragmentation tree in from MS2BrowserModule
fragments	feed SIRIUS fragmentation annotation for the MS2 scan
id	id to be used to define a namespace via NS() (must match id in callModule for the server Module)

Value

Returns its internalValues

Functions

• FeatureReportModule: server logic

• FeatureReportModuleUI: UI elements

See Also

values for a description of the values object

mjhelf/Mosaic documentation built on April 28, 2022, 11:32 a.m.