API for mjhelf/Mosaic
Metaboseek platform

Global functions
.characterTail Source code
.onAttach Source code
.onLoad Source code
.peakArea Source code
.withHistory Man page Source code
ChangeFTGroupingModule Man page Source code
ChangeFTGroupingModuleUI Man page Source code
ColumnSelModule Man page Source code
ColumnSelModuleUI Man page Source code
EICOptionsModule Man page Source code
EICOptionsModuleUI Man page Source code
EICgeneral Man page Source code
EICmodule Man page Source code
EICmoduleUI Man page Source code
EICplot Man page Source code
EICtitles Man page Source code
FTAnalysisParam Man page Source code
FTAnalysisParam-class Man page
FTAnova Man page
FTAnova,MseekFT-method Man page
FTBasicAnalysis Man page
FTBasicAnalysis,MseekFT-method Man page
FTCluster Man page
FTCluster,MseekFT-method Man page
FTFilter Man page
FTFilter,MseekFT-method Man page
FTMS2scans Man page
FTMS2scans,MseekFT,listOrNULL-method Man page
FTMzMatch Man page
FTMzMatch,MseekFT-method Man page
FTNormalize Man page
FTNormalize,MseekFT-method Man page
FTNormalize,data.frame-method Man page
FTOldPeakShapes Man page
FTOldPeakShapes,MseekFT,listOrNULL-method Man page
FTPCA Man page
FTPCA,MseekFT-method Man page
FTPeakShapes Man page
FTPeakShapes,MseekFT,listOrNULL-method Man page
FTProcessHistory Man page Source code
FTProcessHistory-class Man page
FTT.test Man page
FTT.test,MseekFT-method Man page
FTedges,MseekFT-method Man page
FTselection Man page Source code
FTselection.reactivevalues Man page Source code
FeatureReportModule Man page Source code
FeatureReportModuleUI Man page Source code
FeatureTable Man page Source code
FeatureTable.reactivevalues Man page Source code
FeatureTable<- Man page
FeatureTable<-.MseekFT Man page
FeatureTable<-.data.frame Man page
FeatureTableContainer Man page Source code
FeatureTableContainerUI Man page Source code
FilePathModule Man page Source code
FilePathModuleUI Man page Source code
FilterContainer Man page Source code
FilterContainerUI Man page Source code
FilterModule Man page Source code
FilterModuleUI Man page Source code
FindMS2ScansModule Man page Source code
FindMS2ScansModuleUI Man page Source code
FindPatternsModule Man page Source code
FindPatternsModuleUI Man page Source code
FunParam Man page Man page Source code
FunParam-class Man page
GetIntensitiesModule Man page Source code
GetIntensitiesModuleUI Man page Source code
GetSiriusWidget Man page Source code
GetSiriusWidgetUI Man page Source code
GlobalOptionsModule Man page Source code
GlobalOptionsModuleUI Man page Source code
GroupedEICModule Man page Source code
GroupedEICModuleUI Man page Source code
ListToReactiveValues Man page Source code
LoadDataModule Man page Source code
LoadDataModuleUI Man page Source code
LoadMSDataModule Man page Source code
LoadMSDataModuleUI Man page Source code
LoadNetworkModule Man page Source code
LoadNetworkModuleUI Man page Source code
LoadSessionModule Man page Source code
LoadSessionModuleUI Man page Source code
LoadTableModule Man page Source code
LoadTableModuleUI Man page Source code
MS2BrowserModule Man page Source code
MS2BrowserModuleUI Man page Source code
MZcalcModule Man page Source code
MZcalcModuleUI Man page Source code
MainPageContainer Man page Source code
MainPageContainerUI Man page Source code
MainPlotContainer Man page Source code
MainPlotContainerUI Man page Source code
MainTableModule Man page Source code
MainTableModuleUI Man page Source code
MassShiftsModule Man page Source code
MassShiftsModuleUI Man page Source code
MatchReferenceModule Man page Source code
MatchReferenceModuleUI Man page Source code
ModalWidget Man page Source code
ModalWidgetUI Man page Source code
MosCluster Man page Source code
Mseek.colors Man page
MseekAnova Man page Source code
MseekContainer Man page Source code
MseekContainerUI Man page Source code
MseekContainers Man page Source code
MseekContainersUI Man page Source code
MseekExamplePreload Man page Source code
MseekFamily Man page
MseekGraphs Man page
MseekHash Man page
MseekHash,MseekFamily-method Man page
MseekHeader Man page Source code
MseekHistoryWidget Man page Source code
MseekHistoryWidgetUI Man page Source code
MseekMinimalServer Man page Source code
MseekMinimalUI Man page Source code
MseekModules Man page Source code
MseekModulesUI Man page Source code
MseekOptions Man page Source code
MseekSidebar Man page Source code
MseekWidgets Man page Source code
MseekWidgetsUI Man page Source code
MultiEICmodule Man page Source code
MultiEICmoduleUI Man page Source code
MultiFilterModule Man page Source code
MultiFilterModuleUI Man page Source code
MultiSpecmodule Man page Source code
MultiSpecmoduleUI Man page Source code
MzqueryModule Man page Source code
MzqueryModuleUI Man page Source code
NetworkModule Man page Source code
NetworkModuleUI Man page Source code
OptionsContainer Man page Source code
OptionsContainerUI Man page Source code
Parentsearch Man page
PcaViewModule Man page Source code
PcaViewModuleUI Man page Source code
PeakPickModule Man page Source code
PeakPickModuleUI Man page Source code
PeptideAnnotationModule Man page Source code
PeptideAnnotationModuleUI Man page Source code
PeptideCalcModule Man page Source code
PeptideCalcModuleUI Man page Source code
PeptideModificationsModule Man page Source code
PeptideModificationsModuleUI Man page Source code
PeptideSequencePlotWidget Man page Source code
PeptideSequencePlotWidgetUI Man page Source code
PlotBrowserModule Man page Source code
PlotBrowserModuleUI Man page Source code
PlotModule Man page Source code
PlotModuleUI Man page Source code
PlotWindow Man page Source code
QuickPlotsModule Man page Source code
QuickPlotsModuleUI Man page Source code
RTplot Man page Source code
RegroupMSDataModule Man page Source code
RegroupMSDataModuleUI Man page Source code
RtCorrViewModule Man page Source code
RtCorrViewModuleUI Man page Source code
SaveNetworkModule Man page Source code
SaveNetworkModuleUI Man page Source code
SaveSessionModule Man page Source code
SaveSessionModuleUI Man page Source code
SaveTableModule Man page Source code
SaveTableModuleUI Man page Source code
SelectActiveTableModule Man page Source code
SelectActiveTableModuleUI Man page Source code
SelectMS2Module Man page Source code
SelectMS2ModuleUI Man page Source code
SelectMSGroupingModule Man page Source code
SelectMSGroupingModuleUI Man page Source code
SelectProjectFolderModule Man page Source code
SelectProjectFolderModuleUI Man page Source code
ShowSiriusModule Man page Source code
ShowSiriusModuleUI Man page Source code
SimplifyNetworkModule Man page Source code
SimplifyNetworkModuleUI Man page Source code
SiriusModule Man page Source code
SiriusModuleUI Man page Source code
SiriusOptionsModule Man page Source code
SiriusOptionsModuleUI Man page Source code
SpecModule2 Man page Source code
SpecModule2UI Man page Source code
Specmodule Man page Source code
SpecmoduleUI Man page Source code
SpecplotWidget Man page Source code
SpecplotWidgetUI Man page Source code
SwitchButton Man page Source code
SwitchButtonUI Man page Source code
TableAnalysisModule Man page Source code
TableAnalysisModuleUI Man page Source code
TableModule Man page Source code
TableModule2 Man page Source code
TableModule2UI Man page Source code
TableModuleUI Man page Source code
TableUpdateChunk Man page Source code
UploadTableModule Man page Source code
UploadTableModuleUI Man page Source code
VennDiagramModule Man page Source code
VennDiagramModuleUI Man page Source code
VennWidgetModule Man page Source code
VennWidgetModuleUI Man page Source code
WelcomePageModule Man page Source code
WelcomePageModuleUI Man page Source code
activeFT Man page Source code
activeFT<- Man page
addLines Man page Source code
addProcessHistory Man page
analyzeFT Man page
analyzeTable Man page Source code
asInclusionlist Man page Source code
assignColor Man page Source code
bestgauss Man page Source code
buildMseekFT Man page
buildMseekFT,XCMSnExp-method Man page
buildMseekFT,data.frame-method Man page
buildMseekGraph Man page
calcMZs Man page Source code
cameraWrapper Man page Source code
checkFolders Man page Source code
colorRampLegend Man page Source code
constructFeatureTable Man page Source code
constructRawLayout Man page Source code
dashboardHeaderM Man page
densplot Man page Source code
densplotModuleUI Man page Source code
densplotWidget Man page Source code
error,ProcessHistory-method Man page
exIntensities Man page
fastPeakShapes Man page Source code
featureCalcs Man page Source code
featureReport Man page Source code
featureTableNormalize Man page
filenamemaker Man page Source code
findMSnScans Man page Source code
findMSnScans.OnDiskMSnExp Man page Source code
findMSnScans.reactivevalues Man page Source code
find_peaks2 Man page Source code
findsubgraph Man page Source code
foldChange Man page Source code
getAllScans Man page Source code
getFilters Man page Source code
getMseekIntensities Man page
getMseekIntensities,MseekFT,listOrNULL,MseekFTOrNULL-method Man page
getMseekIntensities,MseekFT,listOrNULL,missing-method Man page
getScanInfo Man page Source code
getSirius Man page Source code
getSiriusTree Man page Source code
getSpecList,MseekFT,listOrNULL-method Man page
getSpectra Man page Source code
getSpectra.OnDiskMSnExp Man page Source code
getSpectra.reactivevalues Man page Source code
get_common_dir Man page Source code
getgauss Man page
getpeaks2 Man page Source code
groupPlot Man page Source code
groupedplot Man page Source code
groupingTable,MseekFamily-method Man page
groupingTable<-,MseekFamily,data.frame-method Man page
hasAdjustedRtime Man page
hasAdjustedRtime,MseekFamily-method Man page
hasError,ProcessHistory-method Man page
intensityCols,MseekFamily-method Man page
intensityCols<-,MseekFamily-method Man page
is.MseekFT Man page Source code
is.MseekFamily Man page Source code
is.MseekGraph Man page Source code
layout_components_qgraph Man page
legendplot Man page Source code
listMS2scans Man page Source code
loadMseekFT Man page
loadMseekFT,character-method Man page
loadMseekGraph Man page
loadMseekGraph,character-method Man page
loadMseekSession Man page Source code
loadRawM Man page
mActionButton Man page Source code
mDownloadButton Man page
makeColorscheme Man page Source code
makeRTlist2 Man page Source code
makeScanlist2 Man page Source code
massquery Man page Source code
matchReference,MseekFT,MseekFT-method Man page
matchReference,MseekGraph,MseekFT-method Man page
matchedToCharacter Man page Source code
mergeMSold Man page Source code
mergepeaks2 Man page Source code
multiEIC Man page
multiEICplus Man page
multittest Man page
mzMatch Man page Source code
parsePatterns Man page Source code
parseTitle Man page Source code
peakDetect Man page Source code
peakFitter Man page Source code
peakFunction Man page Source code
plotSMILE Man page Source code
plotTree Man page Source code
plotlyTextFormatter Man page Source code
plotpeaks Man page Source code
previousStep Man page
previousStep,MseekFamily-method Man page
processHistory Man page
processHistory,MseekFamily-method Man page
quickMergeMS Man page Source code
rawEICm Man page Source code
rawGrouping Man page Source code
reactiveValuesToListRec Man page Source code
reconstructValues Man page Source code
removeNAs Man page
removeNAs,MseekFT-method Man page
rename Man page
rename,MseekFamily-method Man page
reverselog_trans Man page Source code
rtadjust Man page Source code
rtexport Man page Source code
runMseek Man page Source code
runPeptideApp Man page Source code
runSirius Man page Source code
safelog Man page Source code
saveMseekFT Man page
saveMseekFT,MseekFT-method Man page
saveMseekGraph Man page
saveMseekGraph,MseekGraph-method Man page
saveMseekSession Man page Source code
saveScanlist Man page Source code
savetable Man page Source code
searchFunParam,MseekFamily-method Man page
show,FTProcessHistory-method Man page
simpleTableModule Man page Source code
simpleTableModuleUI Man page Source code
simplify,MseekGraph-method Man page
simplifyGraph Man page Source code
specplot Man page
specplot2 Man page
subsetEICs Man page Source code
tableGrouping Man page Source code
tableWriter Man page Source code
updateDF Man page Source code
updateFT Man page Source code
updateFTIndex Man page Source code
updateFTgrouping Man page Source code
updateFeatureTable Man page Source code
updateRawLayout Man page Source code
updaterModule Man page Source code
updaterModuleUI Man page Source code
values Man page
writeMS Man page Source code
writeStatus Man page Source code
xcmsWidget Man page Source code
xcmsWidgetUI Man page Source code
mjhelf/Mosaic documentation built on Sept. 23, 2019, 5:45 a.m.