loadRawM: loadRawM

In mjhelf/Mosaic: Metaboseek platform

loadRawM

Description

TIME CONSUMING. This step does not need to be repeated when adjusting other parameters (e.g. feature list, EIC ppm or RT) Generates an R-readable data structure (a list of xcmsRaw objects) in memory from MS data files defined in the file list.

Usage

loadRawM(filelist, MSn = T, workers = 1, rnames = filelist)

Arguments

filelist	a list of mzXML or mzML files (character vector)
MSn	should MSn data be read in? defaults to TRUE
workers	How many cores to use (cf. BiocParallel and SnowParam, argument only used if more than 10 files are loaded). NOTE: this argument is now ignored (calls bpparam() internally)
rnames	names of the xcmsRaw objects in the list returned, defaults to the filepaths of the source files.

Details

This is a wrapper for xcms::loadRaw that can process multiple filenames at a time and supports parallel processing

Value

a list of xcmsRaw objects

mjhelf/Mosaic documentation built on April 28, 2022, 11:32 a.m.