Man pages for mjhelf/Mosaic
Metaboseek platform
| activeFT | activeFT |
| addLines | addLines |
| analyzeFT | analyzeFT |
| analyzeTable | analyzeTable |
| asInclusionlist | asInclusionlist |
| asMetaboAnalyst | asMetaboAnalyst |
| assignColor | assignColor |
| bestgauss | bestgauss |
| buildMseekFT | buildMseekFT |
| calcMZs | calcMZs |
| cameraWrapper | cameraWrapper |
| ChangeFTGroupingModule | ChangeFTGroupingModule |
| checkFolders | checkFolders |
| colorRampLegend | colorRampLegend |
| ColumnSelModule | ColumnSelModule |
| constructFeatureTable | constructFeatureTable |
| constructRawLayout | constructRawLayout |
| dashboardHeaderM | dashboardHeaderM |
| densplot | densplot |
| densPlotWidget | densplotWidget |
| dot-calculateM | .calculateM |
| dot-getFTFormat | .getFTFormat |
| dot-reformatFeatureTable | .reformatFeatureTable |
| dot-withHistory | .withHistory |
| DownloadPlotWidget | DownloadPlotWidget |
| EICgeneral | EICgeneral |
| EICmodule | EICmodule |
| EICOptionsModule | EICOptionsModule |
| EICplot | EICplot |
| EICtitles | EICtitles |
| exIntensities | exIntensities |
| fastPeakShapes | fastPeakShapes |
| featlistCompare | featlistCompare |
| featureCalcs | featureCalcs |
| featureReport | featureReport |
| FeatureReportModule | FeatureReportModule |
| FeatureTable | FeatureTable |
| FeatureTableContainer | FeatureTableContainer |
| featureTableNormalize | featureTableNormalize |
| filenamemaker | Make filenames for exported .csv or .pdf files |
| FilePathModule | FilePathModule |
| FilterContainer | FilterContainer |
| FilterModule | FilterModule |
| findLabeledPeaks | findLabeledPeaks |
| findLabels | findLabels |
| FindMS2ScansModule | FindMS2ScansModule |
| findMSnScans | findMSnScans |
| FindPatternsModule | FindPatternModule |
| find_peaks2 | find_peaks2 |
| findsubgraph | findsubgraph |
| foldChange | foldChange |
| FTAnalysisParam | Constructor for FTAnalysisParam class |
| FTAnalysisParam-class | Parameter class for Feature Table analysis |
| FTProcessHistory | Constructor for FTProcessHistory class |
| FTProcessHistory-class | Parameter class for Feature Table analysis |
| FTselection | FTselection |
| FunParam | FunParam |
| FunParam-class | Parameter class for Feature Table analysis |
| getAllScans | getAllScans |
| get_common_dir | Get common root folder of file paths |
| getFilters | getFilters |
| getgauss | getgauss |
| GetIntensitiesModule | GetIntensitiesModule |
| getpeaks2 | getpeaks2 |
| getScanInfo | getScanInfo |
| getSirius | getSirius |
| getSiriusTree | getSiriusTree |
| GetSiriusWidget | GetSiriusWidget |
| getSpectra | getSpectra |
| GlobalOptionsModule | GlobalOptionsModule |
| gm_mean | gm_mean |
| GroupedEICModule | GroupedEICModule |
| groupedplot | Plot summary data on grouped data |
| groupPlot | groupPlot |
| LabelFinderModule | LabelFinderModule |
| layout_components_qgraph | layout_components_qgraph |
| legendplot | legendplot |
| listMS2scans | listMS2scans |
| ListToReactiveValues | ListToReactiveValues |
| LoadDataModule | LoadDataModule |
| LoadMSDataModule | LoadMSDataModule |
| loadMseekSession | loadMseekSession |
| LoadNetworkModule | LoadNetworkModule |
| loadRawM | loadRawM |
| LoadSessionModule | LoadSessionModule |
| LoadTableModule | LoadTableModule |
| mActionButton | mActionButton |
| MainPageContainer | MainPageContainer |
| MainPlotContainer | MainPlotContainer |
| MainTableModule | MainTableModule |
| makeColorscheme | makeColorscheme |
| makeRTlist2 | makeRTlist2 |
| makeScanlist2 | makeScanlist2 |
| massquery | massquery |
| MassShiftsModule | MassShiftsModule |
| matchedToCharacter | matchedToCharacter |
| MatchReferenceModule | MatchReferenceModule |
| mDownloadButton | mDownloadButton |
| mergecollectlist | mergecollectlist |
| mergeMSold | mergeMSold |
| mergepeaks2 | mergepeaks2 |
| ModalWidget | ModalWidget |
| MosCluster | MosCluster |
| MS2BrowserModule | MS2BrowserModule |
| MseekAnova | MseekAnova |
| Mseek.colors | Mseek.colors |
| MseekContainer | MseekContainer |
| MseekContainers | MseekContainers |
| MseekExamplePreload | MseekExamplePreload |
| MseekFamily | MseekFamily |
| MseekGraphs | MseekGraphs |
| MseekHistoryWidget | MseekHistoryWidget |
| MseekMinimalServer | MseekMinimalServer |
| MseekMinimalUI | MseekMinimalUI |
| MseekModules | MseekModules |
| MseekOptions | MseekOptions |
| MseekWidgets | MseekWidgets |
| multiEIC | multiEIC |
| MultiEICmodule | MultiEICmodule |
| multiEICplus | multiEICplus |
| MultiFilterModule | MultiFilterModule |
| MultiSpecModule | MultiSpecmodule |
| multittest | multittest |
| MZcalcModule | MZcalcModule |
| mzMatch | mzMatch |
| MzqueryModule | MzqueryModule |
| NetworkModule | NetworkModule |
| OptionsContainer | OptionsContainer |
| Parentsearch | Parentsearch |
| parsePatterns | parsePatterns |
| parseTitle | parseTitle |
| PcaViewModule | PcaViewModule |
| peakDetect | peakDetect |
| peakFitter | peakFitter |
| peakFunction | peakFunction |
| PeakPickModule | PeakPickModule |
| PeptideAnnotationModule | PeptideAnnotationModule |
| PeptideCalcModule | PeptideCalcModule |
| PeptideModificationsModule | PeptideModificationsModule |
| PeptideSequencePlotWidget | PeptideSequencePlotWidget |
| PlotBrowserModule | PlotBrowserModule |
| plotlyTextFormatter | plotlyTextFormatter |
| PlotModule | PlotModule |
| plotpeaks | plotpeaks |
| plotSMILE | plotSMILE |
| plotTree | plotTree |
| PlotWindow | PlotWindow |
| quickMergeMS | quickMergeMS |
| QuickPlotsModule | QuickPlotsModule |
| RatioPlotModule | RatioPlotModule |
| rawEICm | rawEICm |
| rawGrouping | rawGrouping |
| reactiveValuesToListRec | reactiveValuesToListRec |
| reconstructValues | reconstructValues |
| RegroupMSDataModule | RegroupMSDataModule |
| RenameTableModule | RenameTableModule |
| reverselog_trans | reverselog_trans |
| rtadjust | rtadjust |
| RtCorrViewModule | RtCorrViewModule |
| rtexport | rtexport |
| RTplot | RTplot |
| runMseek | RunMseek |
| runSirius | runSirius |
| safelog | safelog |
| saveMseekSession | saveMseekSession |
| SaveNetworkModule | SaveNetworkModule |
| saveScanlist | saveScanlist |
| SaveSessionModule | SaveSessionModule |
| savetable | savetable |
| SaveTableModule | SaveTableModule |
| SelectActiveTableModule | SelectActiveTableModule |
| SelectMS2Module | SelectMS2Module |
| SelectMSGroupingModule | SelectMSGroupingModule |
| SelectProjectFolderModule | SelectProjectFolderModule |
| ShowSiriusModule | ShowSiriusModule |
| simpleTableModule | simpleTableModule |
| simplifyGraph | simplifyGraph |
| SimplifyNetworkModule | SimplifyNetworkModule |
| SiriusModule | SiriusModule |
| SiriusOptionsModule | SiriusOptionsModule |
| Specmodule | Specmodule |
| SpecModule2 | SpecModule2 |
| specplot | specplot |
| specplot2 | specplot2 |
| SpecplotWidget | SpecplotWidget |
| subsetEICs | subsetEICs |
| SwitchButton | SwitchButton |
| TableAnalysisModule | TableAnalysisModule |
| tableGrouping | tableGrouping |
| TableModule | TableModule |
| TableModule2 | TableModule |
| TableUpdateChunk | TableUpdateChunk |
| tableWriter | tableWriter |
| updateDF | updateDF |
| updateFeatureTable | updateFeatureTable |
| updateFT | updateFT |
| updateFTgrouping | updateFTgrouping |
| updateFTIndex | updateFTgrouping |
| updateRawLayout | updateRawLayout |
| updaterModule | updaterModule |
| UploadTableModule | UploadTableModule |
| values | values |
| VennDiagramModule | VennDiagramModule |
| VennWidgetModule | VennWidgetModule |
| WelcomePageModule | WelcomePageModule |
| writeMS | writeMS |
| writeStatus | writeStatus |
| xcmsWidget | xcmsWidget |
