getAllScans: getAllScans
In mjhelf/Mosaic: Metaboseek platform
View source: R/Functions_deprecated.R
getAllScans R Documentation
getAllScans
Description
get a list of all scans in a scanlist
Usage
getAllScans(
scanlist,
MSData,
removeNoise = NULL,
type = c("ms2", "ms1", "acquisition")
)
Arguments
scanlist
as returned by makeScanlist2()
MSData
list of xcmsRaw objects
removeNoise
if not NULL, a numeric specifying a relative intensity
cutoff (<1, relative to maximum peak intensity)
type
specify what the scan number represents, either
"acquisition", "ms1" or "ms2".
Value
a list of MS spectra (each in matrix format)
mjhelf/Mosaic documentation built on April 28, 2022, 11:32 a.m.
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View source: R/Functions_deprecated.R
| getAllScans | R Documentation |
getAllScans
Description
get a list of all scans in a scanlist
Usage
getAllScans(
scanlist,
MSData,
removeNoise = NULL,
type = c("ms2", "ms1", "acquisition")
)
Arguments
scanlist |
as returned by makeScanlist2() |
MSData |
list of xcmsRaw objects |
removeNoise |
if not NULL, a numeric specifying a relative intensity cutoff (<1, relative to maximum peak intensity) |
type |
specify what the scan number represents, either "acquisition", "ms1" or "ms2". |
Value
a list of MS spectra (each in matrix format)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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