getSiriusTree: getSiriusTree
In mjhelf/Mosaic: Metaboseek platform
View source: R/Functions_SIRIUS.R
getSiriusTree R Documentation
getSiriusTree
Description
get additional SIRIUS results (fragmentation trees) for a spectrum
Usage
getSiriusTree(paths, formula)
Arguments
paths
list generated by getSirius()
formula
molecular formula prediction to get details for
Details
-
annotations the matching file from spectra subfolder
as data.frame
-
trees_dot the matching .dot tree file, read in by
DiagrammeR::grViz
-
trees_json the matching .json tree file, read in by
jsonlite::read_json
Value
Returns a named list with fragmentation tree objects for plotting,
see |codeDetails
mjhelf/Mosaic documentation built on April 28, 2022, 11:32 a.m.
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View source: R/Functions_SIRIUS.R
| getSiriusTree | R Documentation |
getSiriusTree
Description
get additional SIRIUS results (fragmentation trees) for a spectrum
Usage
getSiriusTree(paths, formula)
Arguments
paths |
list generated by |
formula |
molecular formula prediction to get details for |
Details
-
annotationsthe matching file fromspectrasubfolder as data.frame -
trees_dotthe matching.dottree file, read in byDiagrammeR::grViz -
trees_jsonthe matching.jsontree file, read in byjsonlite::read_json
Value
Returns a named list with fragmentation tree objects for plotting, see |codeDetails
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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