PeptideCalcModule: PeptideCalcModule

In mjhelf/Mosaic: Metaboseek platform

PeptideCalcModule

Description

This module generates a new feature table with mz values based on peptide sequences and charges specified in the current FeatureTable, and also applies variable and fixed peptide modifications.

Usage

PeptideCalcModule(input, output, session, values)

PeptideCalcModuleUI(id)

Arguments

input	arguments necessary for use with callModule()
output	arguments necessary for use with callModule()
session	arguments necessary for use with callModule()
values	a reactiveValues object that in effect gives read and write access to external objects
id	id to be used to define a namespace via NS() (must match id in callModule for the server Module)

Details

Does not return anything, but

requires

PeptideModificationsModule

modifies

FeatureTable(), activeFT(values)

reads

values$GlobalOpts$Peptides.variableMods, values$GlobalOpts$Peptides.fixedMods, FeatureTable(values)$df

Value

If the server module for this Module returns something, it is described in Details.

Functions

• PeptideCalcModule: server logic for PeptideCalcModule

• PeptideCalcModuleUI: UI elements for PeptideCalcModule

See Also

values for a description of the values object

mjhelf/Mosaic documentation built on April 28, 2022, 11:32 a.m.