rawEICm: rawEICm

In mjhelf/Mosaic: Metaboseek platform

rawEICm

Description

EICs from an xcmsRaw object, modified version of xcms::rawEIC xcmsRaw method. Major difference: Handling of cases where no scan is in rt range. xcms::rawEIC also drops the last scan within range, rawEICm does not.

Usage

rawEICm(
  object,
  mzrange = numeric(),
  rtrange = numeric(),
  scanrange = numeric(),
  viewermode = T
)

Arguments

object	xcmsRaw object
mzrange	a range of m/z values (numeric(2)).
rtrange	a range of rt values (numeric(2)).
scanrange	a range of scan number values (numeric(2)).
viewermode	True to change handling of out of range rt values for the Mseek viewer. DEPRECATED (always used)

Value

a list with elements scan and intensity, representing intensity for an m/z range across scans

mjhelf/Mosaic documentation built on April 28, 2022, 11:32 a.m.