Man pages for mknoll/cnAnalysis450k
Copy Number Analysis for 450k Illumina Methylation Arrays
| calcFisher | Apply Fishers exact test |
| createBinMatrix | Create Matrix from calculated Bins |
| createBins | Bin CN data |
| createBinsFast | Faster binning of CN data |
| createConumeeMatrix | Create matrix from conumee data |
| createSegmentMatrix | Create Segment-Matrix |
| dasenMset | Adapted dasen function |
| determineArrayType | Determines Array Type |
| findCutoffs | Finding cutoffs |
| findCutoffsRun | Finding cutoffs |
| findCutoffsRunFast | Identifying cutoffs |
| findSegments | Find Segments in the provided CN data |
| findSegmentsFast | Find Segments in the provided CN data for set parameters |
| getAnnoData | Get Annotation Object |
| getTxValues | Get TX CNV values |
| getTxValuesFast | Get TX CNV values |
| runConumee | Analyze data with conumee |
| segmentData | Binarize Data |
| segmentDataAbs | Define gain / loss with given cutoffs |
