dasenMset: Adapted dasen function

In mknoll/cnAnalysis450k: Copy Number Analysis for 450k Illumina Methylation Arrays

Description

dasen function from the wateRmelon package, returns, however, a MethylSet. Code from bgeqot.R.

Usage

dasenMset(mns, uns, onetwo)

Arguments

mns	getMethyl()
uns	getUnmethyl()
onetwo	probe Types ("I" or "II")

Value

dasen normalized MethylSet

Examples

m <- minfi::getMeth(minfiData::MsetEx[,1])
u <- minfi::getUnmeth(minfiData::MsetEx[,1])
#ot <- minfi::getAnnotation(minfiData::MsetEx)$Type
ot <- c(rep("I",200), rep("II", (length(u[,1])-200)))
dasenMset(m,u,ot)

mknoll/cnAnalysis450k documentation built on May 23, 2019, 2:01 a.m.