createConumeeMatrix: Create matrix from conumee data
In mknoll/cnAnalysis450k: Copy Number Analysis for 450k Illumina Methylation Arrays
Description
Usage
Arguments
Value
Examples
Description
Create matrix from conumee segment / bin data.
Usage
1
Arguments
data
output of runConumee(), might contain segments,
bins or transcripts
Value
n x m matrix, n beeing the amoutn of segments / bins;
m equals the amount of samples
Examples
1
2
3
4
5
6
require(IlluminaHumanMethylation450kanno.ilmn12.hg19)
norm <- minfi::preprocessRaw(minfiData::RGsetEx)
samples <- norm[,1]
ctrl <- norm[,4]
candidatesDATA <- runConumee(samples,ctrl,"segments")
createConumeeMatrix(candidatesDATA)[1:3,,drop=FALSE]
mknoll/cnAnalysis450k documentation built on May 23, 2019, 2:01 a.m.
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Description Usage Arguments Value Examples
Description
Create matrix from conumee segment / bin data.
Usage
1 |
Arguments
data |
output of runConumee(), might contain segments, bins or transcripts |
Value
n x m matrix, n beeing the amoutn of segments / bins; m equals the amount of samples
Examples
1 2 3 4 5 6 | require(IlluminaHumanMethylation450kanno.ilmn12.hg19)
norm <- minfi::preprocessRaw(minfiData::RGsetEx)
samples <- norm[,1]
ctrl <- norm[,4]
candidatesDATA <- runConumee(samples,ctrl,"segments")
createConumeeMatrix(candidatesDATA)[1:3,,drop=FALSE]
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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