Man pages for mknoll/cnAnalysis450k
Copy Number Analysis for 450k Illumina Methylation Arrays

calcFisherApply Fishers exact test
createBinMatrixCreate Matrix from calculated Bins
createBinsBin CN data
createBinsFastFaster binning of CN data
createConumeeMatrixCreate matrix from conumee data
createSegmentMatrixCreate Segment-Matrix
dasenMsetAdapted dasen function
determineArrayTypeDetermines Array Type
findCutoffsFinding cutoffs
findCutoffsRunFinding cutoffs
findCutoffsRunFastIdentifying cutoffs
findSegmentsFind Segments in the provided CN data
findSegmentsFastFind Segments in the provided CN data for set parameters
getAnnoDataGet Annotation Object
getTxValuesGet TX CNV values
getTxValuesFastGet TX CNV values
runConumeeAnalyze data with conumee
segmentDataBinarize Data
segmentDataAbsDefine gain / loss with given cutoffs
mknoll/cnAnalysis450k documentation built on July 13, 2017, 4:03 p.m.