Files in mkschuster/bsfR

BSF R package

R/bsf_genomes.R R/bsf_rnaseq_cufflinks.R R/bsf_rnaseq_deseq.R R/bsf_rnaseq_tuxedo.R R/bsf_utilities.R R/bsf_variant_calling.R exec/bsf_aligner_summary.R exec/bsf_chipseq_annotation.R exec/bsf_chipseq_chipqc.R exec/bsf_chipseq_diffbind.R exec/bsf_environment.R exec/bsf_exonerate_granges.R exec/bsf_genome_blacklist_export.R exec/bsf_genome_blacklist_import.R exec/bsf_genome_blacklist_merge.R exec/bsf_genome_seqinfo_import.R exec/bsf_genome_seqinfo_merge.R exec/bsf_illumina_demultiplex_sam.R exec/bsf_kallisto_summary.R exec/bsf_rnaseq_deseq_analysis.R exec/bsf_rnaseq_deseq_counts.R exec/bsf_rnaseq_deseq_enrichr.R exec/bsf_rnaseq_deseq_go.R exec/bsf_rnaseq_deseq_gsea.R exec/bsf_rnaseq_deseq_heatmap.R exec/bsf_rnaseq_deseq_results.R exec/bsf_rnaseq_deseq_star.R exec/bsf_rnaseq_deseq_summary.R exec/bsf_rnaseq_deseq_volcano.R exec/bsf_rnaseq_merge_cufflinks_frames.R exec/bsf_rnaseq_process_cuffdiff.R exec/bsf_rnaseq_process_cufflinks.R exec/bsf_rnaseq_tophat_summary.R exec/bsf_star_secondary.R exec/bsf_star_summary.R exec/bsf_sysdata.R exec/bsf_transcriptome_granges_import.R exec/bsf_transcriptome_granges_map.R exec/bsf_transcriptome_granges_merge.R exec/bsf_trimmomatic_summary.R exec/bsf_variant_calling_coverage.R exec/bsf_variant_calling_filter.R exec/bsf_variant_calling_insert_size.R exec/bsf_variant_calling_snpedia.R exec/bsf_variant_calling_summary.R exec/bsf_variant_calling_transcribed_target_regions.R